NBI has transfer agreements with the following institutions:
- University of Northwestern
- Oak Hills Christian College
- Crown College
- Crossroads College
- Trinity International University
- School of Missionary Aviation Technology
- Montana Bible College
- Visible Music College
- Olivet Nazarene University
- Emmaus Bible College
- Cornerstone University
Students have transferred credits to other schools as well, including the following:
- Columbia International University
- Colorado Christian University
- Arizona Christian University
- Huntington University
- Grace College
- Bethel University
- Maranatha Baptist University